PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_14093.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 210aa    MW: 22713.8 Da    PI: 9.7233
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_14093.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-182171256
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             +y+GVr ++ +gr++AeIrdp++   r r++lg+f+ta++Aa+a++aa+++++g+
  Rsa1.0_14093.1_g00001.1 21 RYRGVRKRP-WGRYAAEIRDPVK---RIRVWLGTFDTAKDAARAYDAAAREFRGA 71
                             59*******.**********755...5*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.8412178IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-222179IPR016177DNA-binding domain
CDDcd000181.19E-182178No hitNo description
Gene3DG3DSA:3.30.730.106.2E-312179IPR001471AP2/ERF domain
PfamPF008472.5E-112170IPR001471AP2/ERF domain
SMARTSM003801.0E-352184IPR001471AP2/ERF domain
PRINTSPR003671.8E-102233IPR001471AP2/ERF domain
PRINTSPR003671.8E-104460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MTKSGSNPNP NPVENNAEGI RYRGVRKRPW GRYAAEIRDP VKRIRVWLGT FDTAKDAARA  60
YDAAAREFRG ANAKTNFPTL LELQMKGSGY TRAPRQSRTV HSVSPLAARL AALPQLPLSL  120
GGGSRGACYP QVLAARPLAA RPLSVRPLAA RPLVARPLAE RPVYCCNTTA CATCGAESES  180
DSSSVLEFED EAEEKPQQLN LDLSLSPPAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-201778163ATERF1
3gcc_A1e-201778163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591220.11e-101PREDICTED: ethylene-responsive transcription factor 4-like
RefseqXP_013705903.11e-101PREDICTED: ethylene-responsive transcription factor 4-like
SwissprotO803403e-46ERF78_ARATH; Ethylene-responsive transcription factor 4
TrEMBLA0A078GKT41e-101A0A078GKT4_BRANA; BnaA05g14650D protein
TrEMBLA0A0D3CQD31e-101A0A0D3CQD3_BRAOL; Uncharacterized protein
STRINGBra038107.1-P3e-99(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.15e-30ethylene responsive element binding factor 4